About this Author
Derek Lowe, an Arkansan by birth, got his BA from Hendrix College and his PhD in organic chemistry from Duke before spending time in Germany on a Humboldt Fellowship on his post-doc. He's worked for several major pharmaceutical companies since 1989 on drug discovery projects against schizophrenia, Alzheimer's, diabetes, osteoporosis and other diseases.
To contact Derek email him directly: derekb.lowe@gmail.com
Twitter: Dereklowe
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Category Archives
May 2, 2013
Posted by Derek
I've been reading E. O. Wilson's new book, Letters to a Young Scientist . It's the latest addition to the list of "advice from older famous scientists" books, which also includes Peter Medawar's similarly titled Advice To A Young Scientist and what is probably the grandfather of the entire genre, Ramón y Cajal's Advice for a Young Investigator . A definite personal point of view comes across in this one, since its author is famously unafraid to express his strongly held opinions. There's some 100-proof Wilson in this book as well:
. . .Science is the wellspring of modern civilization. It is not just "another way of knowing", to be equated with religion or transcendental meditation. It takes nothing away from the genius of the humanities, including the creative arts. Instead it offers ways to add to their content. The scientific method has been consistent better than religious beliefs in explaining the origin and meaning of humanity. The creation stories of organized religions, like science, propose to explain the origin of the world, the content of the celestial sphere, and even the nature of time and space. These mythic accounts, based mostly on the dreams and epiphanies of ancient prophets, vary from one religion's belief to another. Colorful they are, and comforting to the minds of believers, but each contradicts all the others. And when tested in the real world they have so far proved wrong, always wrong.
And that brings up something else about all the books of this type: they're partly what their titles imply, guides for younger scientists. They're partly memoirs of their authors' lives (Francis Crick's What Mad Pursuit is in this category, although it has a lot of useful advice itself). And they're all attempts to explain what science really is and how it really works, especially to readers who may well not be scientists themselves.
Wilson does some of all three here, although he uses examples from his own life and research mainly as examples of the advice he's giving. And that advice, I think, is almost always on target. He has sections on how to pick areas of research, methods to use for discovery, how to best spend your time as a scientist, and so on. The book is absolutely, explicitly aimed at those who want to make their mark by discovering new things, not at those who would wish to climb other sorts of ladders. (For example, he tells academic scientists "Avoid department-level administration beyond thesis committee chairmanships if at all fair and possible. Make excuses, dodge, plead, trade." If your ambition is to become chairman of the department or a VP of this or that, this is not the book to turn to.
But I've relentlessly avoided being put onto the managerial track myself, so I can relate to a lot of what this book has to say. Wilson spent his life at Harvard, so much of his advice has an academic slant, but the general principles of it come through very clearly. Here's how to pick an area to concentrate on:
I believe that other experienced scientists would agree with me that when you are selecting a domain of knowledge in which to conduct original research, it is wise to look for one that is sparsely inhabited. . .I advise you to look for a chance to break away, to find a subject you can make your own. . .if a subject is already receiving a great deal of attention, if it has a glamorous aura, if its practitioners are prizewinners who receive large grants, stay away from that subject.
One of the most interesting parts of the book for me is its take on two abilities that most lay readers would take as prerequisites for a successful scientist: mathematical ability and sheer intelligence in general. The first is addressed very early in the book, in what may well become a famous section:
. . .If, on the other hand, you are a bit short in mathematical training, even very short, relax. You are far from alone in the community of scientists, and here is a professional secret to encourage you: many of the most successful scientists in the world today are mathematically no more than semiliterate.
He recommends making up this deficiency, as much as you find it feasible to do so, but he's right. The topic has come up around here - I can tell you for certain that the math needed to do medicinal chemistry is not advanced, and mostly consists of being able to render (and understand) data in a variety of graphical forms. If you can see why a log/log plot tends to give you straightened-out lines, you've probably got enough math to do med-chem. You'll also need to understand something about statistics, but (again) mostly in how to interpret it so you aren't fooled by data. Pharmacokinetics gets a bit more mathematical, and (naturally) molecular modeling itself is as math-heavy as anyone could want, but the chemistry end of things is not.
As for intelligence, see what you think about this:
Original discoveries cannot be made casually, not by anyone at any time or anywhere. The frontier of scientific knowledge, often referred to as the cutting edge, is reached with maps drawn by earlier investigators. . .But, you may well ask, isn't the cutting edge a place only for geniuses? No, fortunately. Work accomplished on the frontier defines genius, not just getting there. In fact, both accomplishments along the frontier and the final eureka moment are achieved more by entrepreneurship and hard work than by native intelligence. This is so much the case that in most fields most of the time, extreme brightness may be a detriment. It has occurred to me, after meeting so many successful researchers in so many disciplines, that the ideal scientist is smart only in an intermediate degree: bright enough to see what can be done but not so bright as to become bored doing it.
By "entrepreneurship", he doesn't mean forming companies. That's Wilson's term for opportunistic science - setting up some quick and dirty experiments around a new idea to see what might happen, and being open to odd results as indicators of a new direction to take your work. I completely endorse that, in case anyone cares. As for the intelligence part, you have to keep in mind that this is E. O. Wilson telling you that you don't need to be fearsomely intelligent to be successful, and that his scale for evaluating this quality might be calibrated a bit differently from the usual. As Tom Wolfe put it in his essay in Hooking Up , one of Wilson's defining characteristics has been that you could put him down almost anywhere on Earth and he'd be the smartest person in the room. (I should note that Wolfe's essay overall is not exactly a paean, but he knows not to underestimate the guy).
I think that intelligence falls under the "necessary but not sufficient" heading. And I probably haven't seen that many people operate whom the likes of E. O. Wilson would consider extremely smart, so I can't comment much on what happens at that end of the scale. But the phenomenon of people who score very highly on attempted measures of intelligence, but never seem to make much of themselves, is so common as to be a cliché. You cannot be dumb and make a success of yourself as a research scientist. But being smart guarantees nothing.
As an alternative to mathematical ability and (very) high intelligence, Wilson offers the prescription of hard work. "Scientists don't take vacations", he says, they take field trips. That might work out better if you're a field biologist, but not so well for (say) organic chemistry. And actually, I think that clearing your head with some time off actually can help out a great deal when you're bogged down in some topic. But having some part of your brain always on the case really is important. Breaks aside, long-term sustained attention to a problem is worth a lot, and not everyone is capable of it.
Here's more on the opportunistic side of things:
Polymer chemistry, computer programs of biological processes, butterflies of the Amazon, galactic maps, and Neolithic sites in Turkey are the kinds of subjects worthy of a lifetime of devotion. Once deeply engaged, a steady stream of small discoveries is guaranteed. But stay alert for the main chance that lies to the side. There will always be the possibility of a major strike, some wholly unexpected find, some little detail that catches your peripheral attention that might very well, if followed, enlarge or even transform the subject you have chosen. If you sense such a possibility, seize it. In science, gold fever is a good thing.
I know exactly what he's talking about here, and I think he's completely right. Many, many big discoveries have their beginnings in just this sort of thing. Isaac Asimov was on target when he said that the real sound of a breakthrough was not the cry of "Eureka!" but a puzzled voice saying "Hmm. That's funny. . ."
Well, the book has much more where all this comes from. It's short, which tempts a person to read through it quickly. I did, and found that this slighted some of the points it tries to make. It improved on a second pass, in my case, so you may want to keep this in mind.
Comments (16)
+ TrackBacks (0) | Category: Book Recommendations | Who Discovers and Why
April 26, 2013
Posted by Derek
I wanted to mention a project of Prof. Phil Baran of Scripps and his co-authors, Yoshihiro Ishihara and Ana Montero. It's called the Portable Chemist's Consultant, and it's available for iPads here. And here's a web-based look at its features. Baran was good enough to send me an evaluation copy, so I've had a chance to look through it in detail.
It's clearly based on his course in heterocyclic chemistry, and the chapters on pyridines and other heterocycles read like very well-thought-out review articles. But they also take advantage of the iPad's interface, in that specific transformations are shown in detail (with color and animation), and each of these can be expanded to a wider presentation and a thorough list of references (which are linked in their turn). The "Consumer Reports" style tables of recommended synthetic methods at the end of each section seem very useful, too, although they might need some notation for how much experimental support there is for each combination. For an overview of these topics, though, I doubt if anyone could do this better; I became a more literate heterocyclic chemist just by flipping through things. (Here's a video clip of some of these features in action).
So, do I have any reservations? A few. One of the bigger ones (which I'm told that Baran and his team are addressing) might sound trivial: I'm not sure about the title. As it stands, "The Portable Heterocyclic Chemistry Consultant" would be a much more accurate one, because there are large swaths of chemistry that fall within its current subtitle ("A Survival Guide for Discovery, Process, and Radiolabeling") which are not even touched on. For example, scale-up chemistry is mentioned on the cover, but in the current version of the book I didn't really see anything that was of particular relevance to actual scale-up work (things like the feasibility of solvent switching, heat transfer effects and reaction thermodynamics, run-to-run variability and potential purification methods, reagent sourcing, etc.) For medicinal chemists, I can say that the focus is completely on just the synthetic organic end of things; there's nothing on the behavior of any of the heterocyclic systems in vivo (pharmacokinetic trends, routes of metabolism, known toxicity problems, and so on). There's also nothing on spectral characterization, or any analytical chemistry of any sort, and I found no mention of radiolabeling (although I'd be glad to be corrected on that).
So for these reasons, it's a very academic work, but a very good one of its type. And Prof. Baran tells me that it's being revised constantly (at no charge to previous purchasers), and that these sorts of topics are in the works for later versions. If this book is indeed one of those gifts that keeps on giving, then it's a bargain as it stands, but (at the same time) I think that potential buyers should be aware of what they're getting in the current version.
My second reservation is technological. The book is only available on the iPad, and I'm not completely sure that this is a good idea. There's no way that it could be as useful in print, but a web-based interface would still be fine. (Managing ownership and sales is a lot easier in Apple's ecosystem, to be sure). And I'm not sure how many organic chemists own iPads yet. Baran himself seemed a bit surprised when he found out that I don't own one myself (I borrowed a colleague's to have a look). The most common reaction I've had when I tell people about the "PCC" is to say that they don't own an iPad, either, and to ask if there's any other way they can read it. Another problem is that the people that do have iPads certainly don't take them to the lab bench, which is where a work like this would be most useful. On the other hand, plain old computers are ubiquitous at the bench, thanks to electronic lab notebooks and the like.
All this said, though, if you do own an iPad and need to know about heterocyclic chemistry, you should have a look at this work immediately. If not, well, it's well worth keeping an eye on - these are early days.
Comments (15)
+ TrackBacks (0) | Category: Book Recommendations | Chemical News
April 24, 2013
Posted by Derek
The University of Chicago Press has sent along a copy of a new book by DePaul professor Ted Anton, The Longevity Seekers . It's a history of the last thirty years or so of advances in understanding the biochemical pathways of aging. As you'd imagine, much of it focuses on sirtuins, but many other discoveries get put into context as well. There are also thoughts on what this whole story tells us about medical research, the uses of model animal systems, about the public's reaction to new discoveries, and what would happen if (or when) someone actually succeeds in lengthening human lifespan. (That last part is an under-thought topic among people doing research in the field, in my experience, at least in print).
Readers will be interested to note that Anton uses posts and comments on this blog as source material in some places, when he talks about the reaction in the scientific community to various twists and turns in the story. (You'll be relieved to hear that he's also directly interviewed almost all the major players in the field, as well!) If you're looking for a guide to how the longevity field got to where it is today and how everything fits together so far, this should get you up to speed.
Comments (17)
+ TrackBacks (0) | Category: Aging and Lifespan | Book Recommendations
March 29, 2013
Posted by Derek
A colleague pointed out to me this week that there's a new edition of Copeland's Evaluation of Enzyme Inhibitors in Drug Discovery . I haven't seen this expanded and updated version, but the previous one was excellent. From the new preface:
. . .I have attempted to improve upon the first edition by substantially expanding most of the chapters with two overarching aims: to cover more completely the experimental aspects of the evaluation methods contained in each chapter and to enhance the clarity of the presentation, especially for the newcomer to applied enzymology. Toward these ends, a number of additional appendices have been added to the text, providing ready sources of useful information as they apply to quantitative biochemistry in drug discovery.
There are also two new chapters - one on residence time as a factor in enzyme inhibitor action, and another on the connections between in vitro enzymology and the factors in vivo that have to be considered for drug candidate selection. I have no problem recommending this one just on this basis.
And on a different (but still very useful) level, Erland Stevens of Davidson College has sent along a new textbook on medicinal chemistry that he's written for the advanced undergraduate/grad student market. I've looked it over, and it's a fine intro to the field, covering an impressively wide range of topics. All the classic stuff is there, but you'll also find references up to at least 2010, including things like George Whitesides' paper on linkers in fragment-based drug design, the structure of the P2X4 ion channel, and screening of crystallization conditions for API synthesis. If I were teaching a survey course on medicinal chemistry, I would be glad to use this as a text.
Comments (2)
+ TrackBacks (0) | Category: Book Recommendations
January 7, 2013
Posted by Derek
A couple of years ago, I referred to a journal article summarizing many recent examples of bioisosteres in medicinal chemistry. I've been meaning to mention a book that came out late last year, Bioisosteres in Medicinal Chemistry . It looks to be a compendium of all the latest information on functional group substitutions and their effects on solubility, pharmacokinetics, metabolism and the like. Worth a look if this is one of your interests - you can look over the table of contents at that Amazon link.
Comments (8)
+ TrackBacks (0) | Category: Book Recommendations
November 30, 2012
Posted by Derek
A few years ago, I asked the readership for the best books on the practice of medicinal chemistry and drug discovery itself. These may not be exactly stocking stuffers, at least not for most people, but I wanted to mention these again, and to solicit nominations for more recent titles to add to the list. So, here's what I have at the moment:
For general medicinal chemistry, you have Bob Rydzewski's Real World Drug Discovery: A Chemist's Guide to Biotech and Pharmaceutical Research . Many votes also were cast for Camille Wermuth's The Practice of Medicinal Chemistry . For getting up to speed, several readers recommend Graham Patrick's An Introduction to Medicinal Chemistry . And an older text that has some fans is Richard Silverman's The Organic Chemistry of Drug Design and Drug Action .
Process chemistry is its own world with its own issues. Recommended texts here are Practical Process Research & Development by Neal Anderson and Process Development: Fine Chemicals from Grams to Kilograms by Stan Lee (no, not that Stan Lee) and Graham Robinson.
Case histories of successful past projects are found in Drugs: From Discovery to Approval by Rick Ng and also in Walter Sneader's Drug Discovery: A History .
Another book that focuses on a particular (important) area of drug discovery is Robert Copeland's Evaluation of Enzyme Inhibitors in Drug Discovery .
For chemists who want to brush up on their biology, readers recommend Terrence Kenakin's A Pharmacology Primer, Third Edition: Theory, Application and Methods and Molecular Biology in Medicinal Chemistry by Nogrady and Weaver.
Overall, one of the most highly recommended books across the board comes from the PK end of things: Drug-like Properties: Concepts, Structure Design and Methods: from ADME to Toxicity Optimization by Kerns and Di. For getting up to speed in this area, there's Pharmacokinetics Made Easy by Donald Birkett.
In a related field, the standard desk reference for toxicology seems to be Casarett & Doull's Toxicology: The Basic Science of Poisons . Since all of us make a fair number of poisons (as we eventually discover), it's worth a look.
As mentioned, titles to add to the list are welcome - I'll watch the comments for ideas!
Comments (13)
+ TrackBacks (0) | Category: Book Recommendations | Science Gifts
November 17, 2011
Posted by Derek
Just how different is one brain cell from another? I mean, every cell in our body has the same genome, so the differences in type (various neurons, glial cells) must be due to expression during development. And the differences between individual members of a class must be all due to local environment and growth - right?
Maybe not. I wasn't aware of this myself, but there's a growing body of evidence that suggests that neurons might actually differ more at the genomic level than you'd imagine. A lot of this work has come from the McConnell lab at the Salk Institute, where they've been showing that mouse precursor cells can develop into neurons with various chromosomal changes along the way. And instead of a defect (or an experimental artifact), he's hypothesized that this is a normal feature that helps to form the huge neuronal diversity seen in brain tissue.
His latest work used induced pluripotent cells transformed into neurons. Taking these cells from two different people, he found that the resulting neurons had highly variable sequences, with all sorts of insertions, deletions, and transpositions. (The precursor cells had some, too, but different ones, suggesting that the neural cell changes happened along the way). And this recent paper suggests that neurons have an unusual number of transposons in their DNA, which fits right in with McConnell's results.
The implication is that human brains are mosaics of mosaics, at the cell and sequence levels. And that immediately makes you wonder if these processes are involved in disease states (hard to imagine how they wouldn't be). The problem is, it's not too easy to get ahold of well-matched and well-controlled human brain tissue samples to check these ideas. But that's the obvious next step - take several similar-looking neurons and sequence them all the way. Obvious, but very difficult: single-cell sequencing is not so easy, to start with, and how exactly do you grab those single neurons out of the tangle of nerve tissue to sequence them? Someone's going to do this, but it's going to be a chore. (Note: McConnell's group was able to do the pluripotent-cell-derived stuff a bit more easily, since those come out clonal and give you more to work with).
Now, the idea that neurons are taking advantage of chromosomal instability to this degree is a little unnerving. That's because when you think of chromosomal instability, you think of cancer cells (See also the link in that last paragraph. It's interesting, as an aside, to see that those last two are to posts from this blog in 2002 - next year will mark ten years of this stuff! And I also enjoy seeing my remark from back then about "With headlines like this, I can't think why I'm not pulling in thousands of hits a day", since these days I'm running close to 20K/day as it is).
So, on some level, are our brains akin to tumor tissue? You really wonder why brain cancer isn't more common than it is, if these theories are correct. There may well be ways to get "controlled chromosomal instability", though, as opposed to the wild-and-woolly kind, but even the controlled kind is a bit scary. And all this makes me think of a passage from an old science fiction story by James Blish, "This Earth of Hours". The Earthmen have encountered a bizarre civilization that seems to involve many of the star systems toward the interior of the galaxy, and a captured human has informed them that these aliens apparently have no brains per se:
"No brains," the man from the Assam Dragon insisted. "Just lots of ganglia. I gather that's the way all of the races of the Central Empire are organized, regardless of other physical differences. That's what they mean when they say we're all sick - hadn't you realized that?"
"No," 12-Upjohn said in slowly dawning horror. "You had better spell it out."
"Why, they say that's why we get cancer. They say that the brain is the ultimate source of all tumors, and is itself a tumor. They call it 'hostile symbiosis.' "
"Malignant?"
"In the long run. Races that develop them kill themselves off. Something to do with solar radiation; animals on planets of Population II stars develop them, Population I planets don't."
The things you pick up reading 1950s science fiction. Blish, by the way, was an odd sort. He had a biology degree, and a liking for James Joyce, Oswald Spengler, and Richard Strauss. All of these things worked their ways into his stories, which were often much better and more complex than they strictly needed to be. Here's a PDF of "This Earth of Hours", if you're interested - it's not a perfect transcription, though; you'll have to take my word for it that the original has no grammatical errors. It's a good illustration of Blish's style - what appears at first to be a pulpy space-war story turns out to have a lot of odd background dropped into it, along with speculations like the above. And for someone who didn't always write a lot of descriptive prose, preferring to let philosophical points drive his plots, I find Blish's stories strangely vivid, particularly the relatively actionless ones like "Beep" or "Common Time". He's pretty thoroughly out of print these days, but you can find the paperbacks used, and in many cases as e-books. Now if you're looking for someone who always lets philosophical points drive his stores, then you'll be wanting some Borges . (As it happens, I've had occasion to discuss that particular translation with an Argentine co-worker. But this is not a literary blog, not for the most part, so I'll stop there!)
Comments (28)
+ TrackBacks (0) | Category: Biological News | Book Recommendations | Cancer | The Central Nervous System
October 18, 2011
Posted by Derek
I wanted to mention a book I've received a review copy of recently: Writing Chemistry Patents and Intellectual Property: A Practical Guide . The description is accurate. It'll be most useful for people who don't have access to a lot of well-paid legal talent - or at least would like to get things into shape as much as possible before calling them in and starting the meter running. It goes into detail on what makes a valid application, what patent examiners are trained to look for, and how to draft an application that will stand the best chance of surviving scrutiny. It's not a replacement for a patent attorney - you're still going to need one - but it can keep you from wasting the time of one, or from spending your own money while doing so.
Note added for legal reasons: that's an Amazon affiliate link, meaning that Amazon will (without raising the price to you) rebate a small amount of each purchase you make to me - not just that book, but whatever else you might purchase at the same time. I promise to spend it on the sorts of riotous living that one can fund only through Amazon gift cards.
Comments (4)
+ TrackBacks (0) | Category: Book Recommendations | Patents and IP
July 26, 2011
Posted by Derek
I wanted to mention a book I've received, courtesy of the editors: Collaborative Computational Technologies for Biomedical Research . It's a multi-author look at various ways to handle data in all sorts of research partnerships - precompetitive consortia, academia-industrial collaborations, open-source discovery, and so on. Several levels of information are dealt with - patentable IP, raw data, notebook-sharing, etc.
Different readers will find different chapters of use - there's a lot of material covered here, with some unavoidable overlap - but anyone who's having to deal with these issues should definitely have a look.
Obligatory semi-regular note: that's an Amazon link, and this blog is an Amazon affiliate. Any purchases will send a small fee my way, which comes out of Amazon's hide, not yours.
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+ TrackBacks (0) | Category: Book Recommendations
July 13, 2011
Posted by Derek
Comments (45)
+ TrackBacks (0) | Category: Book Recommendations
June 8, 2011
Posted by Derek
I haven't read it yet, but there's a new book on the whole "garage biotech" field, which I've blogged about hereand here. Biopunk looks to be a survey of the whole movement; I hope to go through it shortly.
I'm still on the "let a thousand flowers bloom" side of this issue, myself, but it's certainly not without its worries. But this is the world we've got - where these things are possible, and getting more possible all the time - and we're going to have to make the best of it. Trying to stuff it back down will, I think, only increase the proportion of harmful lunatics who try it.
By the way, since that's an Amazon link, I should note that I do get a cut from them whenever someone buys through a link on the site, and not just from the particular item ordered. I've never had a tip jar on the site, and I never plan to, but the Amazon affiliate program does provide some useful book-buying money around here at no cost to the readership.
Comments (10)
+ TrackBacks (0) | Category: Biological News | Book Recommendations
October 12, 2010
Posted by Derek
One of the speakers here yesterday recommended Walter Sneader's Drug Discovery: A History , which I haven't read. It looks good, though, for a look back on how we got here. He also showed some drug structure "family trees" from Sneader's earlier book, Drug Prototypes and Their Exploitation . I haven't seen a copy of that one in quite a while, and no wonder: the only copy shown on Amazon is used, for $500. Sheesh.
Comments (16)
+ TrackBacks (0) | Category: Book Recommendations | Drug Industry History
September 24, 2010
Posted by Derek
I came across this book the other day, and bought it on sight: Happy Accidents: Serendipity in Modern Medical Breakthroughs . From what I've read of it so far, it's a fine one-stop-reference for all sorts of medical discoveries where fortune favored the prepared mind (as Pasteur put it). There are drug discovery tales, surgical procedures, medical devices, and more.
Even the stories I thought I knew well turn out to have more details. Albert Hoffman's famous discovery of LSD, for example - what I hadn't known was that some of his colleagues didn't believe him when he said he'd taken only 0.25mg of a compound and hallucinated violently for hours. (From what we now know, that was actually a heck of a dose!) So Ernst Rothlin, Sandoz's head of pharmacology, and two others tried it themselves. "Rothlin believed it then", Hoffman noted. Those days will never come again!
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+ TrackBacks (0) | Category: Book Recommendations | Drug Industry History
May 21, 2010
Posted by Derek
I'm going to be off helping out with my daughter's field trip today, so it's not like there are going to be a lot of posts around here. But I did want to mention this book , "The Elements", by Theodore Gray.
That's this guy, Theodore Gray of Wolfram Research and of Wooden Periodic Table fame. He's clearly a wild man for chemical elements, and good for him. Now what someone needs to do is a coffee-table book on photogenic chemical compounds - dissolving potassium permanganate, crystals of chromium (III) chloride, hunks of copper (II) sulfate. It would (as those examples suggest) be mostly inorganic chemistry, but what the hey. . .
Comments (25)
+ TrackBacks (0) | Category: Book Recommendations
March 5, 2010
Posted by Derek
Here's another outside the field - in fact, it's outside of a lot of people's fields. Where Is Everybody? presents fifty possible solutions to the Fermi Paradox: if there are a lot of planets in the galaxy, and if life is pretty easy to get going, and if it's possible to travel or just communicate between solar systems. . .why haven't we seen anything? Enrico Fermi, in his typically disconcerting way, ran the math on this question during a lunchtime conversation in 1950, and realized that at least one of the common assumptions behind it must be off, and by a great deal.
I was thinking about this last night, because this weekend I'll have swarms of fourth graders and their parents looking through my telescope (if the weather cooperates), under the auspices of the Amateur Telescope Makers of Boston. And it's impossible to look at the night sky without wondering what life might exist out there and what form it might take. That Wikipedia article is quite good, but if you find it interesting, this book goes into the question in greater detail. I should note that a new book, The Eerie Silence , has just come out on the same topic, but I haven't seen that one yet.
Comments (27)
+ TrackBacks (0) | Category: Book Recommendations | Life As We (Don't) Know It
February 26, 2010
Posted by Derek
This isn't exactly med-chem, but its focus probably overlaps with the interests of a number of readers around here. I recently came across a copy of A Field Guide to Bacteria and enjoyed it very much. I don't think there's another book quite like it available: it describes where you're likely to find different varieties of bacteria (from hot springs to your fridge), how they behave in a natural environment (as opposed to a culture dish) and how to identify them by field marks, if possible. It's not written for microbiologists, but it can provide a different perspective even if you work in the field (since many people that do focus on pathogens - really a very small subset of bacteria, when you get down to it).
I'm already inspired to set up some Winogradsky columns with my kids, perhaps with some unusual chemical additives to see what happens. If we discover anything, I'll report back. . .
Comments (11)
+ TrackBacks (0) | Category: Book Recommendations | General Scientific News | Infectious Diseases
January 15, 2010
Posted by Derek
Allow me to recommend a book I received a copy of recently, Chad Orzel's How to Teach Physics to Your Dog . Chad's a fellow scientific blogger from way back, and I have had a chance to consume chicken wings and trade lab stories with him. His new book is a fine addition to the what-the-heck-is-quantum-mechanics field, with some very good analogies and explanations. The format is conversational (which has a long history in the teaching of science), but this time, Orzel's dog is holding up the other end of the dialog. It's a device that lets him get at some pretty complex subjects - complex even for humans, I mean. (The famous Gary Larson "Far Side" cartoon, about dogs being so cute when they try to comprehend quantum mechanics does come to mind). Definitely worth a look.
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+ TrackBacks (0) | Category: Blog Housekeeping | Book Recommendations
November 28, 2009
Posted by Derek
I asked recently for suggestions on the best books on med-chem topics, and a lot of good ideas came in via the comments and e-mail. Going over the list, the most recommended seem to be the following:
For general medicinal chemistry, you have Bob Rydzewski's Real World Drug Discovery: A Chemist's Guide to Biotech and Pharmaceutical Research . Many votes also were cast for Camille Wermuth's The Practice of Medicinal Chemistry . For getting up to speed, several readers recommend Graham Patrick's An Introduction to Medicinal Chemistry . And an older text that has some fans is Richard Silverman's The Organic Chemistry of Drug Design and Drug Action .
Process chemistry is its own world with its own issues. Recommended texts here are Practical Process Research & Development by Neal Anderson and Process Development: Fine Chemicals from Grams to Kilograms by Stan Lee (no, not that Stan Lee) and Graham Robinson.
Case histories of successful past projects are found in Drugs: From Discovery to Approval by Rick Ng and also in Walter Sneader's Drug Discovery: A History .
Another book that focuses on a particular (important) area of drug discovery is Robert Copeland's Evaluation of Enzyme Inhibitors in Drug Discovery .
For chemists who want to brush up on their biology, readers recommend Terrence Kenakin's A Pharmacology Primer, Third Edition: Theory, Application and Methods and Molecular Biology in Medicinal Chemistry by Nogrady and Weaver.
Overall, one of the most highly recommended books across the board comes from the PK end of things: Drug-like Properties: Concepts, Structure Design and Methods: from ADME to Toxicity Optimization by Kerns and Di. For getting up to speed in this area, there's Pharmacokinetics Made Easy by Donald Birkett.
In a related field, the standard desk reference for toxicology seems to be Casarett & Doull's Toxicology: The Basic Science of Poisons . Since all of us make a fair number of poisons (as we eventually discover), it's worth a look.
There's a first set - more recommendations will come in a following post (and feel free to nominate more worthy candidates if you have 'em).
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February 18, 2009
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February 11, 2009
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February 22, 2007
Posted by Derek
An undergraduate reader sends along this request:
I was wondering if you had some recommended readings for a second year student, eg books that you have read and made a palpable impression on you when you were my age.
That's a good question, despite the beard-lengthening qualification of "when you were my age". The books that I would recommend aren't the sort that would require course material that a sophomore hasn't had yet, but rather take a wider view. I would recommend Francis Crick's What Mad Pursuit , for one. It's both a memoir of getting into research, and a set of recommendations on how to do it. Crick came from a not-very-promising background, and it's interesting to see how he ended up where he did.
Another author I'd recommend is Freeman Dyson. His essay collections such as Disturbing the Universe and Infinite in All Directions are well-stocked with good writing and good reading on the subject of science and how it's conducted. Dyson is a rare combination: a sensible, grounded visionary.
Another author to seek out is the late Peter Medawar, whose Advice to a Young Scientist is just the sort of thing. Pluto's Republic is also very good. He was a fine writer, whose style occasionally comes close to being too elegant for its own good, but it's nice to read a scientific Nobel prize winner who suffers from such problems.
I've often mentioned Robert Root-Bernstein's Discovering , an odd book about where scientific creativity comes from and whether it can be learned. I think the decision to write the book as a series of conversations between several unconvincing fictional characters comes close to making it unreadable in the normal sense, but the last chapter, summarizing various laws and recommendations for breakthrough discovery, is a wonderful resource.
Those are some of the ones that cover broad scientific topics. There are others that are more narrowly focused, which should be the topic of another post. And I'd also like to do a follow-up on books with no real scientific connection, but which are good additions to one's mental furniture. I have several in mind, but in all of these categories I'd like to throw the question open to the readership as well. I'll try to collect things into some reference posts when the dust eventually clears.
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